Shinygo v0.741 in scientific reports
http://bioinformatics.sdstate.edu/go/ http://bioinformatics.sdstate.edu/go75/
Shinygo v0.741 in scientific reports
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WebShinyGO v0.75 available in testing mode. It includes Ensembl database update, new species from Ensembl Fungi and Ensembl Protists, and STRINGdb (5090 species) update to 11.5. … Welcome to ShinyGO! Just paste your gene list to get enriched GO terms and othe … WebJournal Metrics. Scientific Reports has a 2-year impact factor: 4.996 (2024), and is the 5th most-cited journal in the world, with more than 696,000 citations in 2024*. *2024 Journal Citation ...
WebSep 30, 2024 · Gene ontology (GO) analysis was performed using ShinyGO v0.61 2. GO with a false discovery rate (FDR) corrected at p ≤ 0.05 was regarded as significant enrichment … WebApr 11, 2024 · Dot plot of Gene Ontology (GO) enrichment analysis results obtained with the ShinyGO v0.61 application. The points in each dot plot are sized by the proportion of all proteins within the cluster annotated with the corresponding term and coloured by enrichment confidence (FDR).
WebJul 18, 2024 · The functional enrichment analysis of DEPs identified under different stress conditions was achieved using the ShinyGO (v0.741) application tool ( bioinformatics.sdstate.edu/go ). (26) The enriched GO … WebDec 27, 2024 · ShinyGO is an intuitive, graphical tool for enrichment analysis. Even though its species coverage is not a broad as DAVID, ShinyGO has more comprehensive gene-sets regarding TF and miRNA target genes for human, mouse and Arabidopsis.
WebShinyGO 0.76 Select or search your species. Info Demo genes Reset Background (recommended) Submit FDR cutoff # pathways to show 10203040506080100200500 Pathway size: Min. Max. Remove redundancy Abbreviate pathways Gene IDs examples Try iDEPfor RNA-Seq data analysis Enrichment Chart Tree Network KEGG Genes Groups Plots …
WebMar 24, 2024 · ShinyGO [ 34] is an intuitive, graphical tool for enrichment analysis for investigators to understand the biological meaning behind a large list of genes, and the KEGG database [ 35] was used in this study. christian jensen sullivanWebDec 27, 2024 · ShinyGO's novel features include graphical visualization of enrichment results and gene characteristics, and application program interface (API) access to KEGG and … christian jensen kollegWebMar 29, 2024 · 3/29/2024: V.0.51, Annotation database updated. Welcome to ShinyGO! Just paste your gene list to get enriched GO terms and othe pathways for over 270 plant and … christian jjWebFeature papers are submitted upon individual invitation or recommendation by the scientific editors and must receive positive feedback from the reviewers. ... we report for the first time the optimum procedure of extraction that yielded 46% oleamide-rich tea by soaking safflower in water at 115 °C for 1 min. Olamide is known ... ShinyGO v0.741 ... christian jilka youtubeWebShinyGO v0.75 available in testing mode. It includes Ensembl database update, new species from Ensembl Fungi and Ensembl Protists, and STRINGdb (5090 species) update to 11.5. p( " Oct25, 2024: Interactive genome plot. christian jessen mdWebTop genes, adjusted p< 0.1 were analyzed for enriched pathwayson the web-based ShinyGO v0.61. The network interactive plot shows the relationship between enriched pathways. Darker nodes are more significantly enriched gene sets. Bigger nodes represent larger gene sets (B). Top genes in diabetic HIV-negative persons did not enrich for any pathways. christian jessen partnerWebFeb 22, 2024 · This study provides the first in-depth characterization of the effects of inositol depletion on phospholipid metabolism and gene expression in human cells, … christian jessen 2022